/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_16_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_16_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:52 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
50386602
Paired-end alignments with a unique best hit
31285722
Pairs without alignments under any condition
12561301
Pairs that did not map uniquely
6539579
Genomic sequence context not extractable (edges of chromosomes)
3703
Cytosine Methylation
Total C's analysed
1092880939
Methylated C's in CpG context
15057029
Methylated C's in CHG context
925777
Methylated C's in CHH context
3855517
Methylated C's in Unknown context
38274
Unmethylated C's in CpG context
124769225
Unmethylated C's in CHG context
190492163
Unmethylated C's in CHH context
757781228
Unmethylated C's in Unknown context
2679204
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7807771
original top strand
CTOT
7825361
complementary to original top strand
CTOB
7833818
complementary to original bottom strand
OB
7815069
original bottom strand
Deduplication
Alignments analysed
31282019
Unique alignments
27410458
Duplicates removed
3871561
Duplicated alignments were found at 3380110 different positions
