/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_15_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_15_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:51 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
58435477
Paired-end alignments with a unique best hit
36054469
Pairs without alignments under any condition
15375411
Pairs that did not map uniquely
7005597
Genomic sequence context not extractable (edges of chromosomes)
4286
Cytosine Methylation
Total C's analysed
1273183529
Methylated C's in CpG context
18451109
Methylated C's in CHG context
1105933
Methylated C's in CHH context
4644531
Methylated C's in Unknown context
45447
Unmethylated C's in CpG context
143403182
Unmethylated C's in CHG context
220305751
Unmethylated C's in CHH context
885273023
Unmethylated C's in Unknown context
3176983
Percentage methylation (CpG context)
11.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
9019232
original top strand
CTOT
9001460
complementary to original top strand
CTOB
9007257
complementary to original bottom strand
OB
9022234
original bottom strand
Deduplication
Alignments analysed
36050183
Unique alignments
31726902
Duplicates removed
4323281
Duplicated alignments were found at 3784019 different positions
