zr3644_14_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 20107876 lines in total Total number of methylation call strings processed: 40215752 Final Cytosine Methylation Report ================================= Total number of C's analysed: 486682336 Total methylated C's in CpG context: 7278291 Total methylated C's in CHG context: 427899 Total methylated C's in CHH context: 1764939 Total C to T conversions in CpG context: 54042726 Total C to T conversions in CHG context: 83650906 Total C to T conversions in CHH context: 339517575 C methylated in CpG context: 11.9% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%