/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_14_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_14_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:51 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
36340861
Paired-end alignments with a unique best hit
22515262
Pairs without alignments under any condition
9464680
Pairs that did not map uniquely
4360919
Genomic sequence context not extractable (edges of chromosomes)
2364
Cytosine Methylation
Total C's analysed
793161390
Methylated C's in CpG context
12139072
Methylated C's in CHG context
705306
Methylated C's in CHH context
2907256
Methylated C's in Unknown context
29254
Unmethylated C's in CpG context
88512868
Unmethylated C's in CHG context
137509658
Unmethylated C's in CHH context
551387230
Unmethylated C's in Unknown context
1957994
Percentage methylation (CpG context)
12.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5605235
original top strand
CTOT
5650276
complementary to original top strand
CTOB
5650126
complementary to original bottom strand
OB
5607261
original bottom strand
Deduplication
Alignments analysed
22512898
Unique alignments
20107876
Duplicates removed
2405022
Duplicated alignments were found at 2133883 different positions
