/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_13_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_13_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:51 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
53303436
Paired-end alignments with a unique best hit
32764601
Pairs without alignments under any condition
14153632
Pairs that did not map uniquely
6385203
Genomic sequence context not extractable (edges of chromosomes)
4241
Cytosine Methylation
Total C's analysed
1160796741
Methylated C's in CpG context
15711645
Methylated C's in CHG context
993596
Methylated C's in CHH context
4173551
Methylated C's in Unknown context
38921
Unmethylated C's in CpG context
131370005
Unmethylated C's in CHG context
200977866
Unmethylated C's in CHH context
807570078
Unmethylated C's in Unknown context
2893967
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8187428
original top strand
CTOT
8184122
complementary to original top strand
CTOB
8194850
complementary to original bottom strand
OB
8193960
original bottom strand
Deduplication
Alignments analysed
32760360
Unique alignments
28778856
Duplicates removed
3981504
Duplicated alignments were found at 3482306 different positions
