zr3644_12_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 25658573 lines in total Total number of methylation call strings processed: 51317146 Final Cytosine Methylation Report ================================= Total number of C's analysed: 612809937 Total methylated C's in CpG context: 7396838 Total methylated C's in CHG context: 482709 Total methylated C's in CHH context: 2040503 Total C to T conversions in CpG context: 68440003 Total C to T conversions in CHG context: 102458475 Total C to T conversions in CHH context: 431991409 C methylated in CpG context: 9.8% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%