/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_12_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_12_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:51 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
46849571
Paired-end alignments with a unique best hit
28948214
Pairs without alignments under any condition
12337394
Pairs that did not map uniquely
5563963
Genomic sequence context not extractable (edges of chromosomes)
3041
Cytosine Methylation
Total C's analysed
1014644269
Methylated C's in CpG context
12554888
Methylated C's in CHG context
808424
Methylated C's in CHH context
3407582
Methylated C's in Unknown context
32537
Unmethylated C's in CpG context
114031376
Unmethylated C's in CHG context
171147785
Unmethylated C's in CHH context
712694214
Unmethylated C's in Unknown context
2609786
Percentage methylation (CpG context)
9.9%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7211843
original top strand
CTOT
7277285
complementary to original top strand
CTOB
7252472
complementary to original bottom strand
OB
7203573
original bottom strand
Deduplication
Alignments analysed
28945173
Unique alignments
25658573
Duplicates removed
3286600
Duplicated alignments were found at 2908084 different positions
