/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_11_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_11_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:51 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
56063348
Paired-end alignments with a unique best hit
34270614
Pairs without alignments under any condition
14832830
Pairs that did not map uniquely
6959904
Genomic sequence context not extractable (edges of chromosomes)
4580
Cytosine Methylation
Total C's analysed
1206892002
Methylated C's in CpG context
16575220
Methylated C's in CHG context
1026274
Methylated C's in CHH context
4320799
Methylated C's in Unknown context
42248
Unmethylated C's in CpG context
137880004
Unmethylated C's in CHG context
210169564
Unmethylated C's in CHH context
836920141
Unmethylated C's in Unknown context
3005737
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8553748
original top strand
CTOT
8577936
complementary to original top strand
CTOB
8574939
complementary to original bottom strand
OB
8559411
original bottom strand
Deduplication
Alignments analysed
34266034
Unique alignments
30199415
Duplicates removed
4066619
Duplicated alignments were found at 3555034 different positions
