zr3644_10_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27894195 lines in total Total number of methylation call strings processed: 55788390 Final Cytosine Methylation Report ================================= Total number of C's analysed: 672970784 Total methylated C's in CpG context: 9306910 Total methylated C's in CHG context: 564980 Total methylated C's in CHH context: 2386291 Total C to T conversions in CpG context: 76260586 Total C to T conversions in CHG context: 116489506 Total C to T conversions in CHH context: 467962511 C methylated in CpG context: 10.9% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%