/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_10_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_10_R2_val_2_val_2_val_2.fq.gz
Data processed at 22:10:50 on 2021-01-25
Alignment Stats
Sequence pairs analysed in total
51902712
Paired-end alignments with a unique best hit
31715015
Pairs without alignments under any condition
13743561
Pairs that did not map uniquely
6444136
Genomic sequence context not extractable (edges of chromosomes)
4420
Cytosine Methylation
Total C's analysed
1120505063
Methylated C's in CpG context
15858264
Methylated C's in CHG context
953501
Methylated C's in CHH context
4021291
Methylated C's in Unknown context
39708
Unmethylated C's in CpG context
127966778
Unmethylated C's in CHG context
195809902
Unmethylated C's in CHH context
775895327
Unmethylated C's in Unknown context
2773973
Percentage methylation (CpG context)
11.0%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7967550
original top strand
CTOT
7894629
complementary to original top strand
CTOB
7887972
complementary to original bottom strand
OB
7960444
original bottom strand
Deduplication
Alignments analysed
31710595
Unique alignments
27894195
Duplicates removed
3816400
Duplicated alignments were found at 3333481 different positions
