File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr3644_10_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	51902712	31710595	13743561	6444136	4420	3816400	27894195	672970784	9306910	76260586	564980	116489506	2386291	467962511
zr3644_11_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	56063348	34266034	14832830	6959904	4580	4066619	30199415	726169635	9757130	82339830	610034	125295846	2576124	505590671
zr3644_12_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	46849571	28945173	12337394	5563963	3041	3286600	25658573	612809937	7396838	68440003	482709	102458475	2040503	431991409
zr3644_13_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53303436	32760360	14153632	6385203	4241	3981504	28778856	708901527	9391702	79696757	598774	121675328	2518190	495020776
zr3644_14_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	36340861	22512898	9464680	4360919	2364	2405022	20107876	486682336	7278291	54042726	427899	83650906	1764939	339517575
zr3644_15_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	58435477	36050183	15375411	7005597	4286	4323281	31726902	771512030	10932689	86391470	661769	132324684	2785392	538416026
zr3644_16_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50386602	31282019	12561301	6539579	3703	3871561	27410458	634507438	8550473	71915952	530647	109601187	2219073	441690106
zr3644_17_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	57429743	35419507	14427268	7578364	4604	4449984	30969523	750665344	10065889	85600717	645928	130302636	2695248	521354926
zr3644_18_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50943423	31724044	12874754	6340329	4296	3562322	28161722	680956547	9228355	77023847	581444	118223750	2419643	473479508
zr3644_19_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	48641567	30047806	12637251	5952873	3637	3232868	26814938	652076966	8508318	73797909	548270	112407205	2309048	454506216
zr3644_1_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50993451	31684320	12773379	6532234	3518	3968139	27716181	656185088	8019564	74703497	530436	113553021	2233158	457145412
zr3644_20_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53390071	32485281	14599336	6301606	3848	3931504	28553777	704746106	9253793	79760722	608123	121187516	2523251	491412701
zr3644_21_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50457301	30928792	13479625	6045064	3820	3608166	27320626	671295159	8897366	75903501	566089	115427065	2357111	468144027
zr3644_22_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47019646	29160619	12055540	5799813	3674	3423948	25736671	628767897	8357109	71452883	538491	109045767	2239763	437133884
zr3644_23_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	39902509	24718568	10161807	5019158	2976	2864980	21853588	523762933	6879279	59597776	445302	90544405	1864072	364432099
zr3644_24_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	52244045	32475126	13303250	6461643	4026	3910321	28564805	696581319	9199601	78991176	591767	120496784	2471218	484830773
zr3644_2_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	55025914	33610388	14806238	6604668	4620	4265594	29344794	734681415	9492033	82654442	606030	125509718	2545972	513873220
zr3644_3_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	38913609	23802020	10343037	4765393	3159	2475456	21326564	519734226	6812889	58763328	427744	89213203	1799739	362717323
zr3644_4_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	49306248	30290731	13031821	5980304	3392	3563014	26727717	647545749	8230533	73038669	516089	110297480	2143339	453319639
zr3644_5_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	44083656	27059485	11774109	5246965	3097	2946635	24112850	589371788	7735787	66114577	493412	101010033	2060645	411957334
zr3644_6_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53174813	32880117	13870904	6419936	3856	4016704	28863413	700942212	9171379	78889570	588112	120317877	2480715	489494559
zr3644_7_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	81572749	49802177	22049639	9714845	6088	5744222	44057955	1077845907	14313577	120868908	900907	184099247	3799355	753863913
zr3644_8_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	42336845	26004291	11049243	5280103	3208	2845757	23158534	558395155	7565296	63221600	480801	96372135	2036378	388718945
zr3644_9_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47573665	29238785	11968391	6363218	3271	3686875	25551910	585196152	8185845	66601575	483963	101618372	2033084	406273313