/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_9_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_9_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:40 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
47573665
Paired-end alignments with a unique best hit
28850286
Pairs without alignments under any condition
10440111
Pairs that did not map uniquely
8283268
Genomic sequence context not extractable (edges of chromosomes)
125
Cytosine Methylation
Total C's analysed
1009343213
Methylated C's in CpG context
14341155
Methylated C's in CHG context
839909
Methylated C's in CHH context
3477936
Methylated C's in Unknown context
36395
Unmethylated C's in CpG context
118112411
Unmethylated C's in CHG context
176689558
Unmethylated C's in CHH context
695882244
Unmethylated C's in Unknown context
2439145
Percentage methylation (CpG context)
10.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7236844
original top strand
CTOT
7171624
complementary to original top strand
CTOB
7192356
complementary to original bottom strand
OB
7249337
original bottom strand
Deduplication
Alignments analysed
28850161
Unique alignments
25288521
Duplicates removed
3561640
Duplicated alignments were found at 3131522 different positions
