zr3644_8_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 22869748 lines in total Total number of methylation call strings processed: 45739496 Final Cytosine Methylation Report ================================= Total number of C's analysed: 555061769 Total methylated C's in CpG context: 7434929 Total methylated C's in CHG context: 475617 Total methylated C's in CHH context: 1995391 Total C to T conversions in CpG context: 63708290 Total C to T conversions in CHG context: 95620397 Total C to T conversions in CHH context: 385827145 C methylated in CpG context: 10.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%