/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_8_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_8_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
42336845
Paired-end alignments with a unique best hit
25613542
Pairs without alignments under any condition
9734323
Pairs that did not map uniquely
6988980
Genomic sequence context not extractable (edges of chromosomes)
94
Cytosine Methylation
Total C's analysed
906146238
Methylated C's in CpG context
12408006
Methylated C's in CHG context
784334
Methylated C's in CHH context
3275170
Methylated C's in Unknown context
32964
Unmethylated C's in CpG context
105182054
Unmethylated C's in CHG context
157449282
Unmethylated C's in CHH context
627047392
Unmethylated C's in Unknown context
2202407
Percentage methylation (CpG context)
10.6%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6391563
original top strand
CTOT
6394526
complementary to original top strand
CTOB
6413525
complementary to original bottom strand
OB
6413834
original bottom strand
Deduplication
Alignments analysed
25613448
Unique alignments
22869748
Duplicates removed
2743700
Duplicated alignments were found at 2449204 different positions
