zr3644_7_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 43826281 lines in total Total number of methylation call strings processed: 87652562 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1078990983 Total methylated C's in CpG context: 14181698 Total methylated C's in CHG context: 892953 Total methylated C's in CHH context: 3753193 Total C to T conversions in CpG context: 122189643 Total C to T conversions in CHG context: 183848599 Total C to T conversions in CHH context: 754124897 C methylated in CpG context: 10.4% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%