/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_7_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_7_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
81572749
Paired-end alignments with a unique best hit
49340377
Pairs without alignments under any condition
19347824
Pairs that did not map uniquely
12884548
Genomic sequence context not extractable (edges of chromosomes)
198
Cytosine Methylation
Total C's analysed
1748557586
Methylated C's in CpG context
23524583
Methylated C's in CHG context
1465330
Methylated C's in CHH context
6122809
Methylated C's in Unknown context
59500
Unmethylated C's in CpG context
200474379
Unmethylated C's in CHG context
300747271
Unmethylated C's in CHH context
1216223214
Unmethylated C's in Unknown context
4334330
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
12321508
original top strand
CTOT
12320256
complementary to original top strand
CTOB
12348540
complementary to original bottom strand
OB
12349875
original bottom strand
Deduplication
Alignments analysed
49340179
Unique alignments
43826281
Duplicates removed
5513898
Duplicated alignments were found at 4890647 different positions
