zr3644_6_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28610892 lines in total Total number of methylation call strings processed: 57221784 Final Cytosine Methylation Report ================================= Total number of C's analysed: 699334840 Total methylated C's in CpG context: 9060292 Total methylated C's in CHG context: 580883 Total methylated C's in CHH context: 2442123 Total C to T conversions in CpG context: 79624261 Total C to T conversions in CHG context: 119729436 Total C to T conversions in CHH context: 487897845 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%