/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_6_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_6_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
53174813
Paired-end alignments with a unique best hit
32472179
Pairs without alignments under any condition
12120318
Pairs that did not map uniquely
8582316
Genomic sequence context not extractable (edges of chromosomes)
143
Cytosine Methylation
Total C's analysed
1151670653
Methylated C's in CpG context
15245582
Methylated C's in CHG context
967631
Methylated C's in CHH context
4043361
Methylated C's in Unknown context
38303
Unmethylated C's in CpG context
132527322
Unmethylated C's in CHG context
198821271
Unmethylated C's in CHH context
800065486
Unmethylated C's in Unknown context
2826406
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8112455
original top strand
CTOT
8099104
complementary to original top strand
CTOB
8123747
complementary to original bottom strand
OB
8136730
original bottom strand
Deduplication
Alignments analysed
32472036
Unique alignments
28610892
Duplicates removed
3861144
Duplicated alignments were found at 3417827 different positions
