/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_5_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_5_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
44083656
Paired-end alignments with a unique best hit
26804023
Pairs without alignments under any condition
10278106
Pairs that did not map uniquely
7001527
Genomic sequence context not extractable (edges of chromosomes)
112
Cytosine Methylation
Total C's analysed
952207866
Methylated C's in CpG context
12628932
Methylated C's in CHG context
797225
Methylated C's in CHH context
3315787
Methylated C's in Unknown context
33109
Unmethylated C's in CpG context
109297758
Unmethylated C's in CHG context
164227970
Unmethylated C's in CHH context
661940194
Unmethylated C's in Unknown context
2328229
Percentage methylation (CpG context)
10.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6645834
original top strand
CTOT
6738674
complementary to original top strand
CTOB
6756378
complementary to original bottom strand
OB
6663025
original bottom strand
Deduplication
Alignments analysed
26803911
Unique alignments
23962432
Duplicates removed
2841479
Duplicated alignments were found at 2547583 different positions
