/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_4_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_4_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
49306248
Paired-end alignments with a unique best hit
29947855
Pairs without alignments under any condition
11369491
Pairs that did not map uniquely
7988902
Genomic sequence context not extractable (edges of chromosomes)
134
Cytosine Methylation
Total C's analysed
1061581694
Methylated C's in CpG context
13679546
Methylated C's in CHG context
850507
Methylated C's in CHH context
3492407
Methylated C's in Unknown context
35439
Unmethylated C's in CpG context
121952808
Unmethylated C's in CHG context
181799911
Unmethylated C's in CHH context
739806515
Unmethylated C's in Unknown context
2616781
Percentage methylation (CpG context)
10.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7489798
original top strand
CTOT
7474853
complementary to original top strand
CTOB
7478087
complementary to original bottom strand
OB
7504983
original bottom strand
Deduplication
Alignments analysed
29947721
Unique alignments
26518997
Duplicates removed
3428724
Duplicated alignments were found at 3064526 different positions
