/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_3_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_3_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
38913609
Paired-end alignments with a unique best hit
23587627
Pairs without alignments under any condition
9049921
Pairs that did not map uniquely
6276061
Genomic sequence context not extractable (edges of chromosomes)
93
Cytosine Methylation
Total C's analysed
836335042
Methylated C's in CpG context
11075871
Methylated C's in CHG context
686982
Methylated C's in CHH context
2878096
Methylated C's in Unknown context
28791
Unmethylated C's in CpG context
96926138
Unmethylated C's in CHG context
144520452
Unmethylated C's in CHH context
580247503
Unmethylated C's in Unknown context
2039558
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5867507
original top strand
CTOT
5901456
complementary to original top strand
CTOB
5918738
complementary to original bottom strand
OB
5899833
original bottom strand
Deduplication
Alignments analysed
23587534
Unique alignments
21186405
Duplicates removed
2401129
Duplicated alignments were found at 2147281 different positions
