/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_2_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_2_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:39 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
55025914
Paired-end alignments with a unique best hit
33388393
Pairs without alignments under any condition
12972059
Pairs that did not map uniquely
8665462
Genomic sequence context not extractable (edges of chromosomes)
120
Cytosine Methylation
Total C's analysed
1195501862
Methylated C's in CpG context
15540506
Methylated C's in CHG context
983606
Methylated C's in CHH context
4120629
Methylated C's in Unknown context
38661
Unmethylated C's in CpG context
139270636
Unmethylated C's in CHG context
205694628
Unmethylated C's in CHH context
829891857
Unmethylated C's in Unknown context
2941456
Percentage methylation (CpG context)
10.0%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8328453
original top strand
CTOT
8319972
complementary to original top strand
CTOB
8363956
complementary to original bottom strand
OB
8375892
original bottom strand
Deduplication
Alignments analysed
33388273
Unique alignments
29196594
Duplicates removed
4191679
Duplicated alignments were found at 3641246 different positions
