/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_24_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_24_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
52244045
Paired-end alignments with a unique best hit
32160291
Pairs without alignments under any condition
11633099
Pairs that did not map uniquely
8450655
Genomic sequence context not extractable (edges of chromosomes)
149
Cytosine Methylation
Total C's analysed
1144875434
Methylated C's in CpG context
15276450
Methylated C's in CHG context
973409
Methylated C's in CHH context
4046223
Methylated C's in Unknown context
38191
Unmethylated C's in CpG context
133324942
Unmethylated C's in CHG context
199450694
Unmethylated C's in CHH context
791803716
Unmethylated C's in Unknown context
2772798
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8029544
original top strand
CTOT
8028667
complementary to original top strand
CTOB
8050376
complementary to original bottom strand
OB
8051555
original bottom strand
Deduplication
Alignments analysed
32160142
Unique alignments
28366652
Duplicates removed
3793490
Duplicated alignments were found at 3343763 different positions
