zr3644_23_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 21664232 lines in total Total number of methylation call strings processed: 43328464 Final Cytosine Methylation Report ================================= Total number of C's analysed: 522829732 Total methylated C's in CpG context: 6800694 Total methylated C's in CHG context: 439937 Total methylated C's in CHH context: 1843326 Total C to T conversions in CpG context: 60321590 Total C to T conversions in CHG context: 90190580 Total C to T conversions in CHH context: 363233605 C methylated in CpG context: 10.1% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%