/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_23_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_23_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
39902509
Paired-end alignments with a unique best hit
24454569
Pairs without alignments under any condition
8843135
Pairs that did not map uniquely
6604805
Genomic sequence context not extractable (edges of chromosomes)
117
Cytosine Methylation
Total C's analysed
864632731
Methylated C's in CpG context
11512912
Methylated C's in CHG context
736417
Methylated C's in CHH context
3067998
Methylated C's in Unknown context
29071
Unmethylated C's in CpG context
101057007
Unmethylated C's in CHG context
150569820
Unmethylated C's in CHH context
597688577
Unmethylated C's in Unknown context
2080551
Percentage methylation (CpG context)
10.2%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
6128719
original top strand
CTOT
6076316
complementary to original top strand
CTOB
6097096
complementary to original bottom strand
OB
6152321
original bottom strand
Deduplication
Alignments analysed
24454452
Unique alignments
21664232
Duplicates removed
2790220
Duplicated alignments were found at 2480381 different positions
