zr3644_22_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 25586704 lines in total Total number of methylation call strings processed: 51173408 Final Cytosine Methylation Report ================================= Total number of C's analysed: 629662971 Total methylated C's in CpG context: 8270805 Total methylated C's in CHG context: 535234 Total methylated C's in CHH context: 2223280 Total C to T conversions in CpG context: 72627174 Total C to T conversions in CHG context: 108957659 Total C to T conversions in CHH context: 437048819 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%