/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_22_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_22_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
47019646
Paired-end alignments with a unique best hit
28927483
Pairs without alignments under any condition
10487326
Pairs that did not map uniquely
7604837
Genomic sequence context not extractable (edges of chromosomes)
126
Cytosine Methylation
Total C's analysed
1030634534
Methylated C's in CpG context
13865332
Methylated C's in CHG context
888058
Methylated C's in CHH context
3664744
Methylated C's in Unknown context
33271
Unmethylated C's in CpG context
120629163
Unmethylated C's in CHG context
180106800
Unmethylated C's in CHH context
711480437
Unmethylated C's in Unknown context
2469594
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7198503
original top strand
CTOT
7245331
complementary to original top strand
CTOB
7265217
complementary to original bottom strand
OB
7218306
original bottom strand
Deduplication
Alignments analysed
28927357
Unique alignments
25586704
Duplicates removed
3340653
Duplicated alignments were found at 2954476 different positions
