zr3644_21_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27142162 lines in total Total number of methylation call strings processed: 54284324 Final Cytosine Methylation Report ================================= Total number of C's analysed: 671280147 Total methylated C's in CpG context: 8813988 Total methylated C's in CHG context: 558542 Total methylated C's in CHH context: 2324612 Total C to T conversions in CpG context: 76705613 Total C to T conversions in CHG context: 115125144 Total C to T conversions in CHH context: 467752248 C methylated in CpG context: 10.3% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%