/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_21_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_21_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
50457301
Paired-end alignments with a unique best hit
30628245
Pairs without alignments under any condition
11802929
Pairs that did not map uniquely
8026127
Genomic sequence context not extractable (edges of chromosomes)
99
Cytosine Methylation
Total C's analysed
1084406446
Methylated C's in CpG context
14616250
Methylated C's in CHG context
914023
Methylated C's in CHH context
3783477
Methylated C's in Unknown context
36538
Unmethylated C's in CpG context
125426401
Unmethylated C's in CHG context
187840703
Unmethylated C's in CHH context
751825592
Unmethylated C's in Unknown context
2640043
Percentage methylation (CpG context)
10.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7652272
original top strand
CTOT
7641249
complementary to original top strand
CTOB
7661942
complementary to original bottom strand
OB
7672683
original bottom strand
Deduplication
Alignments analysed
30628146
Unique alignments
27142162
Duplicates removed
3485984
Duplicated alignments were found at 3104659 different positions
