zr3644_20_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28396232 lines in total Total number of methylation call strings processed: 56792464 Final Cytosine Methylation Report ================================= Total number of C's analysed: 705659428 Total methylated C's in CpG context: 9167500 Total methylated C's in CHG context: 602562 Total methylated C's in CHH context: 2495442 Total C to T conversions in CpG context: 80847798 Total C to T conversions in CHG context: 121093094 Total C to T conversions in CHH context: 491453032 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%