/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_20_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_20_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
53390071
Paired-end alignments with a unique best hit
32235145
Pairs without alignments under any condition
12794800
Pairs that did not map uniquely
8360126
Genomic sequence context not extractable (edges of chromosomes)
150
Cytosine Methylation
Total C's analysed
1143360567
Methylated C's in CpG context
15227780
Methylated C's in CHG context
982190
Methylated C's in CHH context
4048786
Methylated C's in Unknown context
42158
Unmethylated C's in CpG context
132587393
Unmethylated C's in CHG context
198046482
Unmethylated C's in CHH context
792467936
Unmethylated C's in Unknown context
2735560
Percentage methylation (CpG context)
10.3%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7753017
original top strand
CTOT
8341465
complementary to original top strand
CTOB
8364216
complementary to original bottom strand
OB
7776297
original bottom strand
Deduplication
Alignments analysed
32234995
Unique alignments
28396232
Duplicates removed
3838763
Duplicated alignments were found at 3390844 different positions
