zr3644_1_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27517298 lines in total Total number of methylation call strings processed: 55034596 Final Cytosine Methylation Report ================================= Total number of C's analysed: 656669587 Total methylated C's in CpG context: 7963596 Total methylated C's in CHG context: 524106 Total methylated C's in CHH context: 2189730 Total C to T conversions in CpG context: 76099250 Total C to T conversions in CHG context: 113434668 Total C to T conversions in CHH context: 456458237 C methylated in CpG context: 9.5% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%