/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_1_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_1_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
50993451
Paired-end alignments with a unique best hit
31434721
Pairs without alignments under any condition
11134052
Pairs that did not map uniquely
8424678
Genomic sequence context not extractable (edges of chromosomes)
115
Cytosine Methylation
Total C's analysed
1113134972
Methylated C's in CpG context
13763919
Methylated C's in CHG context
897841
Methylated C's in CHH context
3720045
Methylated C's in Unknown context
35255
Unmethylated C's in CpG context
131347662
Unmethylated C's in CHG context
194126289
Unmethylated C's in CHH context
769279216
Unmethylated C's in Unknown context
2644308
Percentage methylation (CpG context)
9.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7891335
original top strand
CTOT
7795639
complementary to original top strand
CTOB
7818927
complementary to original bottom strand
OB
7928705
original bottom strand
Deduplication
Alignments analysed
31434606
Unique alignments
27517298
Duplicates removed
3917308
Duplicated alignments were found at 3402879 different positions
