/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_19_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_19_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:38 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
48641567
Paired-end alignments with a unique best hit
29709816
Pairs without alignments under any condition
11031854
Pairs that did not map uniquely
7899897
Genomic sequence context not extractable (edges of chromosomes)
136
Cytosine Methylation
Total C's analysed
1049309911
Methylated C's in CpG context
13871848
Methylated C's in CHG context
885885
Methylated C's in CHH context
3714128
Methylated C's in Unknown context
34625
Unmethylated C's in CpG context
121771359
Unmethylated C's in CHG context
182184732
Unmethylated C's in CHH context
726881959
Unmethylated C's in Unknown context
2544542
Percentage methylation (CpG context)
10.2%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7407406
original top strand
CTOT
7419329
complementary to original top strand
CTOB
7443202
complementary to original bottom strand
OB
7439743
original bottom strand
Deduplication
Alignments analysed
29709680
Unique alignments
26595143
Duplicates removed
3114537
Duplicated alignments were found at 2785014 different positions
