zr3644_18_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27964963 lines in total Total number of methylation call strings processed: 55929926 Final Cytosine Methylation Report ================================= Total number of C's analysed: 680992148 Total methylated C's in CpG context: 9100011 Total methylated C's in CHG context: 578143 Total methylated C's in CHH context: 2394879 Total C to T conversions in CpG context: 78273455 Total C to T conversions in CHG context: 118029388 Total C to T conversions in CHH context: 472616272 C methylated in CpG context: 10.4% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%