/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_18_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_18_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:37 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
50943423
Paired-end alignments with a unique best hit
31468183
Pairs without alignments under any condition
11256355
Pairs that did not map uniquely
8218885
Genomic sequence context not extractable (edges of chromosomes)
180
Cytosine Methylation
Total C's analysed
1116445364
Methylated C's in CpG context
15247444
Methylated C's in CHG context
959631
Methylated C's in CHH context
3950285
Methylated C's in Unknown context
36698
Unmethylated C's in CpG context
130500810
Unmethylated C's in CHG context
195471883
Unmethylated C's in CHH context
770315311
Unmethylated C's in Unknown context
2666148
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7873817
original top strand
CTOT
7843653
complementary to original top strand
CTOB
7858680
complementary to original bottom strand
OB
7891853
original bottom strand
Deduplication
Alignments analysed
31468003
Unique alignments
27964963
Duplicates removed
3503040
Duplicated alignments were found at 3091843 different positions
