zr3644_17_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 30818320 lines in total Total number of methylation call strings processed: 61636640 Final Cytosine Methylation Report ================================= Total number of C's analysed: 753684584 Total methylated C's in CpG context: 9962303 Total methylated C's in CHG context: 640339 Total methylated C's in CHH context: 2667807 Total C to T conversions in CpG context: 87776962 Total C to T conversions in CHG context: 130678592 Total C to T conversions in CHH context: 521958581 C methylated in CpG context: 10.2% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%