/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_17_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_17_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:37 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
57429743
Paired-end alignments with a unique best hit
35252677
Pairs without alignments under any condition
12521081
Pairs that did not map uniquely
9655985
Genomic sequence context not extractable (edges of chromosomes)
164
Cytosine Methylation
Total C's analysed
1257976076
Methylated C's in CpG context
16913211
Methylated C's in CHG context
1080223
Methylated C's in CHH context
4465430
Methylated C's in Unknown context
41529
Unmethylated C's in CpG context
150059765
Unmethylated C's in CHG context
220480977
Unmethylated C's in CHH context
864976470
Unmethylated C's in Unknown context
2971793
Percentage methylation (CpG context)
10.1%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8773352
original top strand
CTOT
8819837
complementary to original top strand
CTOB
8852263
complementary to original bottom strand
OB
8807061
original bottom strand
Deduplication
Alignments analysed
35252513
Unique alignments
30818320
Duplicates removed
4434193
Duplicated alignments were found at 3792438 different positions
