/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_16_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_16_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:37 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
50386602
Paired-end alignments with a unique best hit
30924916
Pairs without alignments under any condition
10955437
Pairs that did not map uniquely
8506249
Genomic sequence context not extractable (edges of chromosomes)
134
Cytosine Methylation
Total C's analysed
1084479570
Methylated C's in CpG context
14831216
Methylated C's in CHG context
907536
Methylated C's in CHH context
3766929
Methylated C's in Unknown context
38054
Unmethylated C's in CpG context
126448721
Unmethylated C's in CHG context
188794776
Unmethylated C's in CHH context
749730392
Unmethylated C's in Unknown context
2598022
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7714679
original top strand
CTOT
7730844
complementary to original top strand
CTOB
7749791
complementary to original bottom strand
OB
7729468
original bottom strand
Deduplication
Alignments analysed
30924782
Unique alignments
27159851
Duplicates removed
3764931
Duplicated alignments were found at 3310491 different positions
