/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_15_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_15_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:37 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
58435477
Paired-end alignments with a unique best hit
35609199
Pairs without alignments under any condition
13456383
Pairs that did not map uniquely
9369895
Genomic sequence context not extractable (edges of chromosomes)
206
Cytosine Methylation
Total C's analysed
1260311301
Methylated C's in CpG context
18139805
Methylated C's in CHG context
1085026
Methylated C's in CHH context
4528243
Methylated C's in Unknown context
45183
Unmethylated C's in CpG context
144086822
Unmethylated C's in CHG context
217607400
Unmethylated C's in CHH context
874864005
Unmethylated C's in Unknown context
3099158
Percentage methylation (CpG context)
11.2%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8900271
original top strand
CTOT
8885262
complementary to original top strand
CTOB
8907048
complementary to original bottom strand
OB
8916412
original bottom strand
Deduplication
Alignments analysed
35608993
Unique alignments
31449079
Duplicates removed
4159914
Duplicated alignments were found at 3690556 different positions
