zr3644_14_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 20014759 lines in total Total number of methylation call strings processed: 40029518 Final Cytosine Methylation Report ================================= Total number of C's analysed: 487571051 Total methylated C's in CpG context: 7212539 Total methylated C's in CHG context: 424318 Total methylated C's in CHH context: 1747285 Total C to T conversions in CpG context: 54807921 Total C to T conversions in CHG context: 83542001 Total C to T conversions in CHH context: 339836987 C methylated in CpG context: 11.6% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%