/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_14_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_14_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:37 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
36340861
Paired-end alignments with a unique best hit
22341478
Pairs without alignments under any condition
8183804
Pairs that did not map uniquely
5815579
Genomic sequence context not extractable (edges of chromosomes)
79
Cytosine Methylation
Total C's analysed
788907403
Methylated C's in CpG context
11967003
Methylated C's in CHG context
694010
Methylated C's in CHH context
2844733
Methylated C's in Unknown context
29476
Unmethylated C's in CpG context
89548490
Unmethylated C's in CHG context
136421293
Unmethylated C's in CHH context
547431874
Unmethylated C's in Unknown context
1911810
Percentage methylation (CpG context)
11.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
5552803
original top strand
CTOT
5596286
complementary to original top strand
CTOB
5618114
complementary to original bottom strand
OB
5574196
original bottom strand
Deduplication
Alignments analysed
22341399
Unique alignments
20014759
Duplicates removed
2326640
Duplicated alignments were found at 2094266 different positions
