zr3644_13_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 28613670 lines in total Total number of methylation call strings processed: 57227340 Final Cytosine Methylation Report ================================= Total number of C's analysed: 709843283 Total methylated C's in CpG context: 9295422 Total methylated C's in CHG context: 593607 Total methylated C's in CHH context: 2492145 Total C to T conversions in CpG context: 80852274 Total C to T conversions in CHG context: 121573406 Total C to T conversions in CHH context: 495036429 C methylated in CpG context: 10.3% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%