/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_13_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_13_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:36 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
53303436
Paired-end alignments with a unique best hit
32491207
Pairs without alignments under any condition
12418721
Pairs that did not map uniquely
8393508
Genomic sequence context not extractable (edges of chromosomes)
185
Cytosine Methylation
Total C's analysed
1155305305
Methylated C's in CpG context
15463701
Methylated C's in CHG context
978549
Methylated C's in CHH context
4080737
Methylated C's in Unknown context
38975
Unmethylated C's in CpG context
133418976
Unmethylated C's in CHG context
199756716
Unmethylated C's in CHH context
801606626
Unmethylated C's in Unknown context
2815212
Percentage methylation (CpG context)
10.4%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8111596
original top strand
CTOT
8117046
complementary to original top strand
CTOB
8130289
complementary to original bottom strand
OB
8132091
original bottom strand
Deduplication
Alignments analysed
32491022
Unique alignments
28613670
Duplicates removed
3877352
Duplicated alignments were found at 3421180 different positions
