zr3644_12_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 25427638 lines in total Total number of methylation call strings processed: 50855276 Final Cytosine Methylation Report ================================= Total number of C's analysed: 610362234 Total methylated C's in CpG context: 7330260 Total methylated C's in CHG context: 477710 Total methylated C's in CHH context: 2009270 Total C to T conversions in CpG context: 68536895 Total C to T conversions in CHG context: 101729911 Total C to T conversions in CHH context: 430278188 C methylated in CpG context: 9.7% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%