/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_12_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_12_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:36 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
46849571
Paired-end alignments with a unique best hit
28579240
Pairs without alignments under any condition
10827059
Pairs that did not map uniquely
7443272
Genomic sequence context not extractable (edges of chromosomes)
114
Cytosine Methylation
Total C's analysed
1002502546
Methylated C's in CpG context
12372696
Methylated C's in CHG context
794788
Methylated C's in CHH context
3327340
Methylated C's in Unknown context
32248
Unmethylated C's in CpG context
113572348
Unmethylated C's in CHG context
168647208
Unmethylated C's in CHH context
703788166
Unmethylated C's in Unknown context
2522025
Percentage methylation (CpG context)
9.8%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7112038
original top strand
CTOT
7173632
complementary to original top strand
CTOB
7169686
complementary to original bottom strand
OB
7123770
original bottom strand
Deduplication
Alignments analysed
28579126
Unique alignments
25427638
Duplicates removed
3151488
Duplicated alignments were found at 2832721 different positions
