/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_11_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_11_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:36 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
56063348
Paired-end alignments with a unique best hit
33950348
Pairs without alignments under any condition
13018208
Pairs that did not map uniquely
9094792
Genomic sequence context not extractable (edges of chromosomes)
112
Cytosine Methylation
Total C's analysed
1200110470
Methylated C's in CpG context
16333777
Methylated C's in CHG context
1009426
Methylated C's in CHH context
4229214
Methylated C's in Unknown context
42306
Unmethylated C's in CpG context
139879266
Unmethylated C's in CHG context
208783817
Unmethylated C's in CHH context
829874970
Unmethylated C's in Unknown context
2928000
Percentage methylation (CpG context)
10.5%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8463459
original top strand
CTOT
8484562
complementary to original top strand
CTOB
8509872
complementary to original bottom strand
OB
8492343
original bottom strand
Deduplication
Alignments analysed
33950236
Unique alignments
29999792
Duplicates removed
3950444
Duplicated alignments were found at 3485585 different positions
