zr3644_10_R1_val_1_val_1_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.22.3 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 27724085 lines in total Total number of methylation call strings processed: 55448170 Final Cytosine Methylation Report ================================= Total number of C's analysed: 673820747 Total methylated C's in CpG context: 9214054 Total methylated C's in CHG context: 561215 Total methylated C's in CHH context: 2356777 Total C to T conversions in CpG context: 77490239 Total C to T conversions in CHG context: 116411583 Total C to T conversions in CHH context: 467786879 C methylated in CpG context: 10.6% C methylated in CHG context: 0.5% C methylated in CHH context: 0.5%