/gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_10_R1_val_1_val_1_val_1.fq.gz and /gscratch/scrubbed/yaaminiv/Hawes/analyses/trimgalore-2/poly-G/zr3644_10_R2_val_2_val_2_val_2.fq.gz
Data processed at 21:40:36 on 2021-03-10
Alignment Stats
Sequence pairs analysed in total
51902712
Paired-end alignments with a unique best hit
31449874
Pairs without alignments under any condition
12046900
Pairs that did not map uniquely
8405938
Genomic sequence context not extractable (edges of chromosomes)
103
Cytosine Methylation
Total C's analysed
1115773727
Methylated C's in CpG context
15618471
Methylated C's in CHG context
940915
Methylated C's in CHH context
3919549
Methylated C's in Unknown context
38912
Unmethylated C's in CpG context
130395725
Unmethylated C's in CHG context
194787000
Unmethylated C's in CHH context
770112067
Unmethylated C's in Unknown context
2693516
Percentage methylation (CpG context)
10.7%
Percentage methylation (CHG context)
0.5%
Percentage methylation (CHH context)
0.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7880637
original top strand
CTOT
7807411
complementary to original top strand
CTOB
7846348
complementary to original bottom strand
OB
7915375
original bottom strand
Deduplication
Alignments analysed
31449771
Unique alignments
27724085
Duplicates removed
3725686
Duplicated alignments were found at 3277491 different positions
