File	Total Reads	Aligned Reads	Unaligned Reads	Ambiguously Aligned Reads	No Genomic Sequence	Duplicate Reads (removed)	Unique Reads (remaining)	Total Cs	Methylated CpGs	Unmethylated CpGs	Methylated chgs	Unmethylated chgs	Methylated CHHs	Unmethylated CHHs
zr3644_10_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	51902712	31449771	12046900	8405938	103	3725686	27724085	673820747	9214054	77490239	561215	116411583	2356777	467786879
zr3644_11_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	56063348	33950236	13018208	9094792	112	3950444	29999792	726425704	9664112	83415513	603679	125099513	2547933	505094954
zr3644_12_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	46849571	28579126	10827059	7443272	114	3151488	25427638	610362234	7330260	68536895	477710	101729911	2009270	430278188
zr3644_13_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53303436	32491022	12418721	8393508	185	3877352	28613670	709843283	9295422	80852274	593607	121573406	2492145	495036429
zr3644_14_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	36340861	22341399	8183804	5815579	79	2326640	20014759	487571051	7212539	54807921	424318	83542001	1747285	339836987
zr3644_15_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	58435477	35608993	13456383	9369895	206	4159914	31449079	769374088	10807738	86998035	654007	131603656	2746440	536564212
zr3644_16_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50386602	30924782	10955437	8506249	134	3764931	27159851	633174381	8466508	72724239	523848	109136529	2191253	440132004
zr3644_17_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	57429743	35252513	12521081	9655985	164	4434193	30818320	753684584	9962303	87776962	640339	130678592	2667807	521958581
zr3644_18_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50943423	31468003	11256355	8218885	180	3503040	27964963	680992148	9100011	78273455	578143	118029388	2394879	472616272
zr3644_19_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	48641567	29709680	11031854	7899897	136	3114537	26595143	651191131	8400203	74612966	541481	111985513	2285729	453365239
zr3644_1_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50993451	31434606	11134052	8424678	115	3917308	27517298	656669587	7963596	76099250	524106	113434668	2189730	456458237
zr3644_20_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53390071	32234995	12794800	8360126	150	3838763	28396232	705659428	9167500	80847798	602562	121093094	2495442	491453032
zr3644_21_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	50457301	30628146	11802929	8026127	99	3485984	27142162	671280147	8813988	76705613	558542	115125144	2324612	467752248
zr3644_22_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47019646	28927357	10487326	7604837	126	3340653	25586704	629662971	8270805	72627174	535234	108957659	2223280	437048819
zr3644_23_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	39902509	24454452	8843135	6604805	117	2790220	21664232	522829732	6800694	60321590	439937	90190580	1843326	363233605
zr3644_24_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	52244045	32160142	11633099	8450655	149	3793490	28366652	696432907	9100912	80020781	585821	120216217	2448615	484060561
zr3644_2_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	55025914	33388273	12972059	8665462	120	4191679	29196594	736774337	9415275	84381751	599477	125621587	2528365	514227882
zr3644_3_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	38913609	23587534	9049921	6276061	93	2401129	21186405	519959348	6749497	59579621	422214	89085714	1778619	362343683
zr3644_4_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	49306248	29947721	11369491	7988902	134	3428724	26518997	646265002	8134524	73563281	512690	109727960	2115791	452210756
zr3644_5_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	44083656	26803911	10278106	7001527	112	2841479	23962432	589669068	7645616	66968289	489110	100804689	2043470	411717894
zr3644_6_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	53174813	32472036	12120318	8582316	143	3861144	28610892	699334840	9060292	79624261	580883	119729436	2442123	487897845
zr3644_7_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	81572749	49340179	19347824	12884548	198	5513898	43826281	1078990983	14181698	122189643	892953	183848599	3753193	754124897
zr3644_8_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	42336845	25613448	9734323	6988980	94	2743700	22869748	555061769	7434929	63708290	475617	95620397	1995391	385827145
zr3644_9_R1_val_1_val_1_val_1_bismark_bt2_pe.bam	47573665	28850161	10440111	8283268	125	3561640	25288521	583047386	8065728	67237922	479515	101006647	2006654	404250920